No, there's only one filter. So be sure that you reinstalled the filter properly, so that it is making contact with the filter switch. If that checks out OK, turn the unit OFF & unplug it for 15 minutes.
After the time has elapsed plug the unit in and turn it ON. Hopefully, during that timeout, the electronics reset and reverted back to the original factory settings, If so, you can now set the controls as you desire.

I hope this helped you and thanks for choosing FixYa.